About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_135539454_135540832_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
135539454 - 135540832
Intron Length:
1379

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATGAA
5'SS Class:
major
3'SS Sequence:
AATGATTTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
CTATTCTCACAT
Flanking Amino Acid:
VGDTAPIYFKKAIMESDEEW
Intron Amino Acid Position:
925

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
72.7
31.7
Major BPS
85
0.87
0.8
85.6
23
Major PPT
73.7
0.53
1
65.5
44.4
Minor 5ss
37.4
-1.4
3.2
48.5
47.7
Minor BPS
47.4
-0.1
1.9
65.81
44.6

Associated Gene:

Gene:
CWF19L2
Ensembl Gene ID:
ENSAPLG00000016072
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016775
135535928 - 135604102
68175