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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_135559352_135576890_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
135559352 - 135576890
Intron Length:
17539

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGGGA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTGACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCTGTTTTAAAA
Flanking Amino Acid:
QQILAKSGGEASSHQDDEPV
Intron Amino Acid Position:
675

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.1
38.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
73.3
0.53
0.9
68.4
36.5
Minor 5ss
28.6
-2.5
3.5
38
46.8
Minor BPS
60.1
0.31
1.5
67.32
39.7

Associated Gene:

Gene:
CWF19L2
Ensembl Gene ID:
ENSAPLG00000016072
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016775
135535928 - 135604102
68175