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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_135576981_135579898_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
135576981 - 135579898
Intron Length:
2918

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATGTTT
5'SS Class:
major
3'SS Sequence:
ACTTTTTTTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
AATTCAGTAATA
Flanking Amino Acid:
IVKAELMGNMELASKLQEEL
Intron Amino Acid Position:
645

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
74.1
36.8
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
77.6
0.62
1
79.1
32.5
Minor 5ss
42.9
-0.8
3.4
61.4
45.4
Minor BPS
50.7
0.02
2.2
68.3
37.9

Associated Gene:

Gene:
CWF19L2
Ensembl Gene ID:
ENSAPLG00000016072
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016775
135535928 - 135604102
68175