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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_135585440_135586976_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
135585440 - 135586976
Intron Length:
1537

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGATTC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
GATCTTAAAAGC
Flanking Amino Acid:
VEEIVAERYGSMEAFQSRLE
Intron Amino Acid Position:
380

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
1
75.9
34.8
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
92.3
0.95
0.6
88.3
21.5
Minor 5ss
42.1
-0.9
3.1
51.6
45.1
Minor BPS
39.2
-0.8
1.9
45.95
36.4

Associated Gene:

Gene:
CWF19L2
Ensembl Gene ID:
ENSAPLG00000016072
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016775
135535928 - 135604102
68175