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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_135588342_135589814_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
135588342 - 135589814
Intron Length:
1473

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGGA
5'SS Class:
major
3'SS Sequence:
CTTTCTTTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
TATGCTATACAC
Flanking Amino Acid:
KRQKAQEIEQAMLSERELNP
Intron Amino Acid Position:
310

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
66.1
40.1
Major BPS
77.3
0.68
1
81.5
27
Major PPT
84.5
0.78
0.6
84.4
23.4
Minor 5ss
28.4
-2.5
3.5
38.3
46.7
Minor BPS
44.6
-0.4
2
57.46
41.1

Associated Gene:

Gene:
CWF19L2
Ensembl Gene ID:
ENSAPLG00000016072
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016775
135535928 - 135604102
68175