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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_135591957_135593359_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
135591957 - 135593359
Intron Length:
1403

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
ATTCTCTATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TTTATATTAAAT
Flanking Amino Acid:
KKDDSSDSSSDSSVEWVESN
Intron Amino Acid Position:
234

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
81.1
32.8
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
76.2
0.59
0.9
74.9
34.4
Minor 5ss
39.6
-1.2
2.9
57
41.2
Minor BPS
62.8
0.48
1.7
83.27
36.9

Associated Gene:

Gene:
CWF19L2
Ensembl Gene ID:
ENSAPLG00000016072
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016775
135535928 - 135604102
68175