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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_135593480_135594178_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
135593480 - 135594178
Intron Length:
699

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATGCAA
5'SS Class:
major
3'SS Sequence:
CCTTTACTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
GTTTACTGAATC
Flanking Amino Acid:
VNERVEQLEKEHSVQKKKKK
Intron Amino Acid Position:
194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
63.8
37.7
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
79.1
0.65
0.8
73.8
30
Minor 5ss
24.7
-2.9
3
29.4
43.3
Minor BPS
63.2
0.39
1.6
73.52
36.8

Associated Gene:

Gene:
CWF19L2
Ensembl Gene ID:
ENSAPLG00000016072
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016775
135535928 - 135604102
68175