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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_135594290_135603634_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
135594290 - 135603634
Intron Length:
9345

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGCGGC
5'SS Class:
major
3'SS Sequence:
CTGTTTGTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
ATTTGGTTATCT
Flanking Amino Acid:
RRQREELLAEAKINYEKEER
Intron Amino Acid Position:
157

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.1
58.1
41
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
73.8
0.54
0.9
72.8
37.5
Minor 5ss
29.8
-2.3
3.5
40.6
46
Minor BPS
48.4
-0
2.6
78
44.5

Associated Gene:

Gene:
CWF19L2
Ensembl Gene ID:
ENSAPLG00000016072
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016775
135535928 - 135604102
68175