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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_135632665_135634379_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
135632665 - 135634379
Intron Length:
1715

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTCGT
5'SS Class:
strong_major
3'SS Sequence:
TTACTCCTTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGTTTAC
U12 Branch Point Sequence:
CCCTCGTTTACT
Flanking Amino Acid:
YLGINKDLYMLVSIKSRRKL
Intron Amino Acid Position:
561

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
74.5
41.9
Major BPS
59.1
0.23
1.2
52.7
42.9
Major PPT
79
0.65
0.8
74.1
30.7
Minor 5ss
36.1
-1.6
3
47.2
43.4
Minor BPS
48.6
-0
2.4
67.36
49.2

Associated Gene:

Gene:
ALKBH8
Ensembl Gene ID:
ENSAPLG00000015851
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024363
135624822 - 135671314
46493