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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_135634646_135635483_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
135634646 - 135635483
Intron Length:
838

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTGTC
5'SS Class:
major
3'SS Sequence:
TTGGTACATCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
GTTTGCATATCT
Flanking Amino Acid:
RKVRRSPCNCIYPSVCDSQK
Intron Amino Acid Position:
291

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
73.7
35.7
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
65
0.34
1
56.4
43.9
Minor 5ss
39.4
-1.2
3.3
58.2
40.5
Minor BPS
49.6
0.05
2.3
77.83
44.1

Associated Gene:

Gene:
ALKBH8
Ensembl Gene ID:
ENSAPLG00000015851
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043341
135624822 - 135671436
46615
ENSAPLT00000024363
135624822 - 135671314
46493
ENSAPLT00000019945
135624822 - 135670594
45773
ENSAPLT00000016554
135624822 - 135667936
43115
ENSAPLT00000046544
135624822 - 135670160
45339