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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_135635639_135639366_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
135635639 - 135639366
Intron Length:
3728

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGTGTA
5'SS Class:
major
3'SS Sequence:
TACTTTGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TGTTCTTTGATT
Flanking Amino Acid:
SGESRYLWTHGITPRKYDII
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
74.1
36.6
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
78.5
0.64
0.9
77.1
36.8
Minor 5ss
41.9
-0.9
3.1
48.8
47.3
Minor BPS
77.8
0.96
1
87.51
31.6

Associated Gene:

Gene:
ALKBH8
Ensembl Gene ID:
ENSAPLG00000015851
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024363
135624822 - 135671314
46493
ENSAPLT00000019945
135624822 - 135670594
45773
ENSAPLT00000016554
135624822 - 135667936
43115
ENSAPLT00000046544
135624822 - 135670160
45339
ENSAPLT00000043341
135624822 - 135671436
46615