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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_135639474_135656565_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
135639474 - 135656565
Intron Length:
17092

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACTTA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
GCCATGTTCATT
Flanking Amino Acid:
EIISLSLGAEIVMDFKHPDG
Intron Amino Acid Position:
204

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
77.4
33.8
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
86.4
0.82
0.7
85.4
29.4
Minor 5ss
46.8
-0.3
3
64.4
47
Minor BPS
40.2
-0.6
2.3
51.87
43.6

Associated Gene:

Gene:
ALKBH8
Ensembl Gene ID:
ENSAPLG00000015851
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024363
135624822 - 135671314
46493
ENSAPLT00000019945
135624822 - 135670594
45773
ENSAPLT00000016554
135624822 - 135667936
43115
ENSAPLT00000046544
135624822 - 135670160
45339
ENSAPLT00000043341
135624822 - 135671436
46615