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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_135656637_135658848_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
135656637 - 135658848
Intron Length:
2212

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGTGTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
GTTATTATAACA
Flanking Amino Acid:
LTVNQYEPGQGIPPHIDTHS
Intron Amino Acid Position:
180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
89.8
23.7
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
80.8
0.69
0.9
76.3
37.7
Minor 5ss
46.2
-0.4
2.8
67.4
43.6
Minor BPS
56.9
0.21
1.6
69.48
36.4

Associated Gene:

Gene:
ALKBH8
Ensembl Gene ID:
ENSAPLG00000015851
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024363
135624822 - 135671314
46493
ENSAPLT00000019945
135624822 - 135670594
45773
ENSAPLT00000016554
135624822 - 135667936
43115
ENSAPLT00000046544
135624822 - 135670160
45339
ENSAPLT00000043341
135624822 - 135671436
46615