Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_135660528_135661214_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

135660528 - 135661214

Intron Length:

687

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTGGGTAAA

5'SS Class:

major

3'SS Sequence:

TGTCTTTTCACAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTAAA

U12 Branch Point Sequence:

GTTACTTTAAAC

Flanking Amino Acid:

DWIGDEDAQNAQKTLKHRKV

Intron Amino Acid Position:

113

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.8

0.61

34.7

Major BPS

0.7

0.9

79.6

29.1

Major PPT

84.2

0.77

0.8

79.4

32.6

Minor 5ss

28.3

-2.5

2.8

38.4

Minor BPS

67.5

0.53

1.4

73.46

36.8

Associated Gene:

Gene:

ALKBH8

Ensembl Gene ID:

ENSAPLG00000015851

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024363

135624822 - 135671314

46493

ENSAPLT00000019945

135624822 - 135670594

45773

ENSAPLT00000016554

135624822 - 135667936

43115

ENSAPLT00000046544

135624822 - 135670160

45339

ENSAPLT00000043341

135624822 - 135671436

46615