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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_135664896_135667792_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
135664896 - 135667792
Intron Length:
2897

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTAAACATAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
79.4
28.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
82.7
0.74
0.7
81.2
30.9
Minor 5ss
29
-2.4
3.2
40.2
45.9
Minor BPS
54.7
0.23
1.8
76.18
39.8

Associated Gene:

Gene:
ALKBH8
Ensembl Gene ID:
ENSAPLG00000015851
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016554
135624822 - 135667936
43115