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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_135669495_135670300_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
135669495 - 135670300
Intron Length:
806

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATATAGT
5'SS Class:
major
3'SS Sequence:
CTTTCTTTTAAAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTATTAT
U12 Branch Point Sequence:
TTTCTTTTAAAG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
76.8
38.2
Major BPS
72.4
0.56
1.1
63.7
42.3
Major PPT
80.4
0.68
1
81.8
27.5
Minor 5ss
42.9
-0.8
2.7
60.2
44.3
Minor BPS
65.1
0.33
1.4
69.62
37.6

Associated Gene:

Gene:
ALKBH8
Ensembl Gene ID:
ENSAPLG00000015851
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019945
135624822 - 135670594
45773