Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_135683958_135695965_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

135683958 - 135695965

Intron Length:

12008

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAT|GTATGTATG

5'SS Class:

major

3'SS Sequence:

TCTATTTTTACAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATCTCAA

U12 Branch Point Sequence:

TGCATCTCAATT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.4

0.65

76.5

38.6

Major BPS

76.9

0.67

0.8

77.7

26.1

Major PPT

88.6

0.87

0.7

83.3

31.6

Minor 5ss

47.9

-0.2

2.5

64.1

40.5

Minor BPS

55.2

0.24

1.6

69.28

41.9

Associated Gene:

Gene:

ELMOD1

Ensembl Gene ID:

ENSAPLG00000015529

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035281

135683903 - 135721636

37734