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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_1356860_1357705_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1356860 - 1357705
Intron Length:
846

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACGGGG
5'SS Class:
major
3'SS Sequence:
CTATTTCTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAT
U12 Branch Point Sequence:
TTTTTCCTATTT
Flanking Amino Acid:
IVEESVTGVHRLYQLSKAGK
Intron Amino Acid Position:
219

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.2
58.7
46.2
Major BPS
71.2
0.53
1
61
37.5
Major PPT
76
0.58
1
73.1
37
Minor 5ss
34.2
-1.8
3.6
46.8
48.5
Minor BPS
60.1
0.4
1.9
84.08
37

Associated Gene:

Gene:
AHCYL2
Ensembl Gene ID:
ENSAPLG00000015897
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016614
1350099 - 1362879
12781