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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_135705073_135705217_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
135705073 - 135705217
Intron Length:
145

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAACTGAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
CTTATTTCAAAT
Flanking Amino Acid:
KPGAARTMKIEASLKGSKSK
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1.1
77.6
32.8
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
86.4
0.82
0.8
80.4
31.7
Minor 5ss
37.5
-1.4
3.2
49
47.2
Minor BPS
50.4
0.09
1.7
69.6
41.4

Associated Gene:

Gene:
ELMOD1
Ensembl Gene ID:
ENSAPLG00000015529
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047074
135695300 - 135721636
26337
ENSAPLT00000035281
135683903 - 135721636
37734
ENSAPLT00000016205
135695966 - 135721636
25671