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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_135705247_135706468_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
135705247 - 135706468
Intron Length:
1222

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
AACCTCTTTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GTGTTTTTAAAA
Flanking Amino Acid:
EASLKGSKSKRLQTSVSVHP
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
23.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
73
0.52
0.8
70
35.5
Minor 5ss
26.6
-2.7
3
30.8
43.1
Minor BPS
64.3
0.44
1.4
68.67
37.7

Associated Gene:

Gene:
ELMOD1
Ensembl Gene ID:
ENSAPLG00000015529
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047074
135695300 - 135721636
26337
ENSAPLT00000035281
135683903 - 135721636
37734
ENSAPLT00000016205
135695966 - 135721636
25671