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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_135712907_135714121_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
135712907 - 135714121
Intron Length:
1215

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGT|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
CATCTCTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
TTTAACTGAAAC
Flanking Amino Acid:
GMGLLGLYNLVYFAEWDTEV
Intron Amino Acid Position:
185

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
74.7
41.5
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
80.6
0.69
0.8
77.3
31
Minor 5ss
41.3
-1
2.8
52.3
44.3
Minor BPS
55
0.14
1.8
71.17
38.9

Associated Gene:

Gene:
ELMOD1
Ensembl Gene ID:
ENSAPLG00000015529
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047074
135695300 - 135721636
26337
ENSAPLT00000035281
135683903 - 135721636
37734
ENSAPLT00000016205
135695966 - 135721636
25671