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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_135714191_135716990_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
135714191 - 135716990
Intron Length:
2800

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TTCATGTTAATA
Flanking Amino Acid:
VLSDSLQPKYSQFSKAEWEK
Intron Amino Acid Position:
208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
75.3
40.4
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
98.2
1.08
0.5
92.3
26.6
Minor 5ss
36.8
-1.5
3.5
56.4
47.8
Minor BPS
52.8
0.08
2.1
66.99
40.2

Associated Gene:

Gene:
ELMOD1
Ensembl Gene ID:
ENSAPLG00000015529
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016205
135695966 - 135721636
25671