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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_135717042_135718255_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
135717042 - 135718255
Intron Length:
1214

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAA
U12 Branch Point Sequence:
CTCTCAAGAAAT
Flanking Amino Acid:
WEKKKFDKAIGYSFAIVGIN
Intron Amino Acid Position:
225

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
87.9
29.3
Major BPS
73.4
0.58
0.9
75.3
29.7
Major PPT
91.4
0.93
0.6
84.6
30.4
Minor 5ss
45.7
-0.5
2.8
59
45.5
Minor BPS
44.6
-0.3
2
64.58
44.9

Associated Gene:

Gene:
ELMOD1
Ensembl Gene ID:
ENSAPLG00000015529
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047074
135695300 - 135721636
26337
ENSAPLT00000035281
135683903 - 135721636
37734
ENSAPLT00000016205
135695966 - 135721636
25671