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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_135789789_135790451_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
135789789 - 135790451
Intron Length:
663

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTATTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
GTCATCTTATTT
Flanking Amino Acid:
IMRIQWNWKIALLFAVFALC
Intron Amino Acid Position:
241

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
79.7
33.4
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
90
0.9
0.7
88.2
28.6
Minor 5ss
44.9
-0.6
3.2
63.2
43.8
Minor BPS
54.3
0.21
1.6
68.69
42.7

Associated Gene:

Gene:
SLC35F2
Ensembl Gene ID:
ENSAPLG00000015302
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033314
135784796 - 135804416
19621
ENSAPLT00000015953
135785681 - 135799894
14214