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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_135790505_135791304_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
135790505 - 135791304
Intron Length:
800

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGGATC
5'SS Class:
major
3'SS Sequence:
TCTCTAACTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTCTCTAACT
Flanking Amino Acid:
LFGTIISGLQLAIVEHRDIM
Intron Amino Acid Position:
223

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.1
70.2
40.1
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
72.3
0.5
0.8
63.8
37
Minor 5ss
39.7
-1.2
3.4
62
42.6
Minor BPS
79
0.99
1.5
96.75
28

Associated Gene:

Gene:
SLC35F2
Ensembl Gene ID:
ENSAPLG00000015302
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033314
135784796 - 135804416
19621
ENSAPLT00000015953
135785681 - 135799894
14214