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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_135798921_135799847_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
135798921 - 135799847
Intron Length:
927

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAATTACT
5'SS Class:
major
3'SS Sequence:
TTTATATTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TTGTCCTTTATA
Flanking Amino Acid:
SRIAHHGWVTWHILKTILLG
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
79
34.2
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
86.8
0.83
0.8
80.8
35.7
Minor 5ss
38.6
-1.3
2.8
49.9
40.2
Minor BPS
71.8
0.68
1.6
79.05
37.5

Associated Gene:

Gene:
SLC35F2
Ensembl Gene ID:
ENSAPLG00000015302
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015953
135785681 - 135799894
14214