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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_135847646_135853140_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
135847646 - 135853140
Intron Length:
5495

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCGCG
5'SS Class:
strong_major
3'SS Sequence:
TTGTTCCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
TTTTACTTACAA
Flanking Amino Acid:
MATSNLLKNKGSLQFEDK
Intron Amino Acid Position:
9

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.8
40.2
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
83.4
0.75
0.7
82
30
Minor 5ss
31.2
-2.1
3.2
38.5
46.7
Minor BPS
61.3
0.35
1.9
77.86
38.5

Associated Gene:

Gene:
CUL5
Ensembl Gene ID:
ENSAPLG00000015028
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015708
135847622 - 135877758
30137
ENSAPLT00000015707
135847622 - 135873369
25748