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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_13586171_13586698_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13586171 - 13586698
Intron Length:
528

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGGGCA
5'SS Class:
major
3'SS Sequence:
TTCTCGCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTGAC
U12 Branch Point Sequence:
CCTGCCTGACGC
Flanking Amino Acid:
PHAHGAAPPHSVELEEAGKE
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.8
0.47
1.1
60.8
38.2
Major BPS
51.1
0.03
1.2
45
39.9
Major PPT
75.3
0.57
0.8
69.4
31.3
Minor 5ss
31.7
-2.1
3.6
44.4
44.2
Minor BPS
43
-0.5
2.1
50.11
46.6

Associated Gene:

Gene:
ATXN7L1
Ensembl Gene ID:
ENSAPLG00000005905
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040031
13475132 - 13586813
111682
ENSAPLT00000028954
13475132 - 13586813
111682
ENSAPLT00000006113
13475132 - 13586813
111682