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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_135872513_135873819_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
135872513 - 135873819
Intron Length:
1307

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGATGA
5'SS Class:
major
3'SS Sequence:
ACAACTTTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTGCCTTATTT
Flanking Amino Acid:
LFSVNQEFSLIKNAKVQKRG
Intron Amino Acid Position:
675

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.68
1
70.7
35.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
73.6
0.53
0.9
69.5
40.7
Minor 5ss
39.7
-1.2
3.1
51.9
45
Minor BPS
71
0.74
1.7
87.57
38.6

Associated Gene:

Gene:
CUL5
Ensembl Gene ID:
ENSAPLG00000015028
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015708
135847622 - 135877758
30137