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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_135892571_135894942_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
135892571 - 135894942
Intron Length:
2372

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTGAGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTATTAATAATT
Flanking Amino Acid:
AAQSLMCGSQDVMVAGGMES
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
79.4
28.9
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
76.2
0.59
1
74
40.3
Minor 5ss
38.1
-1.3
3.1
48.5
47.7
Minor BPS
56.3
0.28
1.8
78.84
37

Associated Gene:

Gene:
ACAT1
Ensembl Gene ID:
ENSAPLG00000014535
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015196
135889583 - 135900977
11395