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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_135897046_135897610_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
135897046 - 135897610
Intron Length:
565

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTATGG
5'SS Class:
major
3'SS Sequence:
ATTTGAATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
AAAATCTCAACT
Flanking Amino Acid:
EIVPVTVSKKGKPDTEVTED
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.1
57.9
41.8
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
76.3
0.59
1
71.7
42.4
Minor 5ss
43.5
-0.7
2.8
56.7
47.4
Minor BPS
56.7
0.29
1.6
69.84
40.3

Associated Gene:

Gene:
ACAT1
Ensembl Gene ID:
ENSAPLG00000014535
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015196
135889583 - 135900977
11395