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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_135897707_135898202_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
135897707 - 135898202
Intron Length:
496

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
TTACCTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAC
U12 Branch Point Sequence:
CGTGTTTAAACA
Flanking Amino Acid:
KLKAVFQKENGTVTAANAST
Intron Amino Acid Position:
186

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
86
29.7
Major BPS
72.4
0.56
1
79.3
29.5
Major PPT
80.4
0.68
0.8
73.5
36.8
Minor 5ss
41.2
-1
3
56.7
42
Minor BPS
49
-0
1.8
58.49
42

Associated Gene:

Gene:
ACAT1
Ensembl Gene ID:
ENSAPLG00000014535
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015196
135889583 - 135900977
11395