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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_135898317_135898721_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
135898317 - 135898721
Intron Length:
405

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTGTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TCTTTTTTGACT
Flanking Amino Acid:
LKVKPLARIVAFADAAVDPI
Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
85.7
25.5
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
84.3
0.77
0.9
79.9
37.7
Minor 5ss
40.8
-1
3
55
43.6
Minor BPS
75.9
0.9
1.1
85.97
34.5

Associated Gene:

Gene:
ACAT1
Ensembl Gene ID:
ENSAPLG00000014535
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015196
135889583 - 135900977
11395