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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_135898787_135899363_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
135898787 - 135899363
Intron Length:
577

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAATC
5'SS Class:
strong_major
3'SS Sequence:
TAAATATTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTTCACAGAAAT
Flanking Amino Acid:
PIAPAYAVPKILSETGLKKE
Intron Amino Acid Position:
246

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
1
79
35.3
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
68.7
0.42
1
59.5
45.6
Minor 5ss
36.6
-1.5
3.3
51.4
45.5
Minor BPS
47.7
-0
2
74.68
40.7

Associated Gene:

Gene:
ACAT1
Ensembl Gene ID:
ENSAPLG00000014535
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015196
135889583 - 135900977
11395