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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_135908661_135908732_R

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
135908661 - 135908732
Intron Length:
72

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGACTAAG
5'SS Class:
major
3'SS Sequence:
CTTCCCTGGGGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATTCAG
U12 Branch Point Sequence:
GGTGCAGTGACC
Flanking Amino Acid:
TAQVYPKVQTILFQCATTLS
Intron Amino Acid Position:
717

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.5
0.39
1.2
67
40
Major BPS
59.4
0.23
1.5
69.4
37.7
Major PPT
48.3
-0.1
1.7
57.2
38.6
Minor 5ss
37.6
-1.4
2.8
46.4
42.3
Minor BPS
43.7
-0.5
2.3
56.49
42

Associated Gene:

Gene:
NPAT
Ensembl Gene ID:
ENSAPLG00000014400
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015028
135903025 - 135923257
20233