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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_135912641_135912929_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
135912641 - 135912929
Intron Length:
289

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
AATTGTCTAACA
Flanking Amino Acid:
TSIDEILGLQGEIHMSEEAI
Intron Amino Acid Position:
219

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
76.2
39.9
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
85.3
0.8
0.7
84.1
30.8
Minor 5ss
34.9
-1.7
3.5
48.2
47.9
Minor BPS
51.1
0.03
2
67.65
38.6

Associated Gene:

Gene:
NPAT
Ensembl Gene ID:
ENSAPLG00000014400
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015028
135903025 - 135923257
20233