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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_135913018_135913100_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
135913018 - 135913100
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATAAAA
5'SS Class:
strong_major
3'SS Sequence:
GGCTGTGTTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
GAGTTCTGAACT
Flanking Amino Acid:
LAENINKILGSDGSVTQAPK
Intron Amino Acid Position:
189

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
78.8
29.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
67.9
0.4
1.1
57.1
47.5
Minor 5ss
32.9
-2
2.9
40.3
45.4
Minor BPS
64.7
0.54
1.4
74.79
41.5

Associated Gene:

Gene:
NPAT
Ensembl Gene ID:
ENSAPLG00000014400
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015028
135903025 - 135923257
20233