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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_135918767_135920343_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
135918767 - 135920343
Intron Length:
1577

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAG
U12 Branch Point Sequence:
AGATCTGTATTT
Flanking Amino Acid:
EDGFIPACLLSLCGKNLTTI
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
85.7
25.5
Major BPS
70.6
0.51
1.5
77.9
34.9
Major PPT
98.2
1.08
0.5
92.3
26.6
Minor 5ss
40.8
-1
3
55
43.6
Minor BPS
45.9
-0.2
2.1
63.55
41.3

Associated Gene:

Gene:
NPAT
Ensembl Gene ID:
ENSAPLG00000014400
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015028
135903025 - 135923257
20233