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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_135926171_135926580_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
135926171 - 135926580
Intron Length:
410

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTCAGTAAT
5'SS Class:
major
3'SS Sequence:
TTTTTTCCCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATTAAT
U12 Branch Point Sequence:
TCTGGATTAATT
Flanking Amino Acid:
LKYFIRHANRRGPRLECQEL
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.3
80.7
33.7
Major BPS
74
0.6
1.2
75.9
36.3
Major PPT
84.6
0.78
0.6
81.2
24.1
Minor 5ss
34.5
-1.8
2.7
43.6
37.4
Minor BPS
50
0.08
2.1
72.41
45

Associated Gene:

Gene:
ATM
Ensembl Gene ID:
ENSAPLG00000012735
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013383
135924607 - 135988698
64092