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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_135936198_135936750_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
135936198 - 135936750
Intron Length:
553

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTATTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTCTCATAAAT
Flanking Amino Acid:
IFSGPPLKPSSSAVCCLALL
Intron Amino Acid Position:
535

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
0.9
72.3
37.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
89
0.88
0.7
85.3
27.8
Minor 5ss
33.4
-1.9
3.6
46.6
48.7
Minor BPS
62.5
0.47
1.7
83.82
36.1

Associated Gene:

Gene:
ATM
Ensembl Gene ID:
ENSAPLG00000012735
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013383
135924607 - 135988698
64092