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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_135937379_135938378_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
135937379 - 135938378
Intron Length:
1000

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTATGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTCTTCAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTAAA
U12 Branch Point Sequence:
CTCTTCTTCAAG
Flanking Amino Acid:
AMIFFLNDAKCVQHFQGKEE
Intron Amino Acid Position:
632

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
82.3
31.1
Major BPS
70.1
0.5
1.1
69.9
35.3
Major PPT
76.6
0.6
1
75.2
33.6
Minor 5ss
58.3
0.28
2.3
72.3
40
Minor BPS
48.6
-0.2
2
55.39
46.1

Associated Gene:

Gene:
ATM
Ensembl Gene ID:
ENSAPLG00000012735
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013383
135924607 - 135988698
64092