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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_135943582_135944049_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
135943582 - 135944049
Intron Length:
468

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTTATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
82.3
31.1
Major BPS
100
1.24
0.5
100
0
Major PPT
83.8
0.76
0.8
81.4
35
Minor 5ss
58.3
0.28
2.3
72.3
40
Minor BPS
67.6
0.63
1.9
89.45
34.7

Associated Gene:

Gene:
ATM
Ensembl Gene ID:
ENSAPLG00000012735
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044189
135941145 - 135951975
10831