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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_135943582_135944237_F

Intron Information:

Intron Rank:
17
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
135943582 - 135944237
Intron Length:
656

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTTTT
5'SS Class:
strong_major
3'SS Sequence:
ATATCACTGTAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATATCAC
U12 Branch Point Sequence:
TTGTGCATACAT
Flanking Amino Acid:
GQFLTIIGAFCILYILNLNV
Intron Amino Acid Position:
959

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
82.3
31.1
Major BPS
69.5
0.49
1
71.8
33.3
Major PPT
54.3
0.1
1.2
58.2
41.7
Minor 5ss
58.3
0.28
2.3
72.3
40
Minor BPS
45.2
-0.2
2.3
69.95
46.5

Associated Gene:

Gene:
ATM
Ensembl Gene ID:
ENSAPLG00000012735
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013383
135924607 - 135988698
64092