Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_135944126_135944277_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

135944126 - 135944277

Intron Length:

152

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAATCCCA

5'SS Class:

major

3'SS Sequence:

TCATTTTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

TATATTTTAAAC

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.3

0.64

1.1

64.4

41.6

Major BPS

90.4

0.7

90.2

19.3

Major PPT

89.3

0.88

0.7

88.1

28.9

Minor 5ss

38.2

-1.3

49.2

46.5

Minor BPS

62.6

0.37

1.4

69.24

35.6

Associated Gene:

Gene:

ATM

Ensembl Gene ID:

ENSAPLG00000012735

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044189

135941145 - 135951975

10831