Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_135944409_135945876_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

135944409 - 135945876

Intron Length:

1468

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGATAATG

5'SS Class:

major

3'SS Sequence:

TCTTTTTTTGAAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAATAAT

U12 Branch Point Sequence:

CTTTTTTTGAAG

Flanking Amino Acid:

VCILAAKSITSLFQDVKQKD

Intron Amino Acid Position:

1016

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.66

73.5

37.1

Major BPS

0.75

78.6

Major PPT

83.7

0.76

0.9

86.3

25.2

Minor 5ss

31.7

-2.1

45.6

Minor BPS

57.5

0.09

1.5

62.4

40.1

Associated Gene:

Gene:

ATM

Ensembl Gene ID:

ENSAPLG00000012735

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013383

135924607 - 135988698

64092

ENSAPLT00000044189

135941145 - 135951975

10831