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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_135947635_135948411_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
135947635 - 135948411
Intron Length:
777

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTAATGCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TCTTATTTAATG
Flanking Amino Acid:
NGLELHLVKKVLKKVSDIFG
Intron Amino Acid Position:
1116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.6
1.15
0.7
84.1
34
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
68.4
0.42
1
62
42.7
Minor 5ss
24.7
-2.9
3.6
32.7
42.2
Minor BPS
65.6
0.35
1.5
67.74
40.6

Associated Gene:

Gene:
ATM
Ensembl Gene ID:
ENSAPLG00000012735
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044189
135941145 - 135951975
10831
ENSAPLT00000013383
135924607 - 135988698
64092