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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_135954674_135954947_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
135954674 - 135954947
Intron Length:
274

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTACA
5'SS Class:
strong_major
3'SS Sequence:
TGTTGTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTTAAT
U12 Branch Point Sequence:
TTGTGCTTAATA
Flanking Amino Acid:
YSKGPYSLLEEMNHFLSVSA
Intron Amino Acid Position:
1515

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
82.6
29.6
Major BPS
69.2
0.48
1.3
71.9
41
Major PPT
86.1
0.81
0.8
80.6
37
Minor 5ss
36.1
-1.6
2.6
44
43
Minor BPS
70.7
0.65
1.7
78.89
38.3

Associated Gene:

Gene:
ATM
Ensembl Gene ID:
ENSAPLG00000012735
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013383
135924607 - 135988698
64092