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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_135956211_135957519_F

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
135956211 - 135957519
Intron Length:
1309

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
CCTTCATTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
ATCACCTTCATT
Flanking Amino Acid:
FNHAGEKAVLEAVGSCLGEI
Intron Amino Acid Position:
1591

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
80.2
30.6
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
82.7
0.74
0.8
76.7
30.7
Minor 5ss
39.1
-1.2
2.8
40.8
45.4
Minor BPS
59.2
0.37
1.8
74.81
42.4

Associated Gene:

Gene:
ATM
Ensembl Gene ID:
ENSAPLG00000012735
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013383
135924607 - 135988698
64092