Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_135959938_135961093_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

135959938 - 135961093

Intron Length:

1156

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAATGTCA

5'SS Class:

major

3'SS Sequence:

ATCCTAGAGCAAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTTGAA

U12 Branch Point Sequence:

CTTTTTTGAAAT

Flanking Amino Acid:

RSATPPSSDSENQVFRSLDK

Intron Amino Acid Position:

1813

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.7

0.7

71.2

34.9

Major BPS

87.2

0.92

0.8

77.7

37.1

Major PPT

47.5

-0.1

1.2

42.1

41.2

Minor 5ss

37.1

-1.5

3.2

48.4

47.2

Minor BPS

60.8

0.42

1.5

77.37

39.2

Associated Gene:

Gene:

ATM

Ensembl Gene ID:

ENSAPLG00000012735

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013383

135924607 - 135988698

64092