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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_135961176_135961524_F

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
135961176 - 135961524
Intron Length:
349

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAATTAT
5'SS Class:
strong_major
3'SS Sequence:
TCTATTTAATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
CTCTATTTAATC
Flanking Amino Acid:
AVVNYLRRQKRSVSGTVFDD
Intron Amino Acid Position:
1840

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
82.5
24.8
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
74.4
0.55
1
74.6
39
Minor 5ss
35.8
-1.6
3
48.7
47.5
Minor BPS
61.8
0.35
1.5
66.44
40.1

Associated Gene:

Gene:
ATM
Ensembl Gene ID:
ENSAPLG00000012735
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013383
135924607 - 135988698
64092